Example with CD4 Protein Sequences

Step 1: Protein Sequences

Download an example FASTA file: CD4 Protein Sequences

Step 2: Select the appropriate Amino Acid Indices from the Form

Step 3: Get the Results (Dendrogram and Distance Matrix), as shown below

Proteins	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32
1	0.018	0.864	0.12	0.801	0.11	0.109	0.11	0.12	0.854	0.837	0.838	0.626	0.801	0.92	0.927	0.978	0.977	0.632	0.955	0.849	0.83	0.784	0.85	0.948	0.778	0.901	0.937	0.907	0.989	0.977	0.931
2	-	0.862	0.124	0.8	0.125	0.122	0.123	0.133	0.847	0.826	0.829	0.615	0.799	0.922	0.929	0.975	0.983	0.624	0.96	0.847	0.828	0.781	0.849	0.947	0.774	0.906	0.933	0.909	0.98	0.98	0.921
3	-	-	0.841	0.817	0.841	0.841	0.844	0.839	0.861	0.804	0.873	0.878	0.821	0.998	0.996	0.908	0.982	0.89	0.961	0.866	0.86	0.806	0.634	0.952	0.795	0.887	0.936	0.89	0.945	1.003	0.934
4	-	-	-	0.795	0.073	0.07	0.073	0.086	0.862	0.847	0.848	0.641	0.801	0.938	0.943	0.964	0.985	0.654	0.965	0.866	0.83	0.786	0.837	0.947	0.783	0.903	0.938	0.9	0.979	0.976	0.94
5	-	-	-	-	0.805	0.806	0.809	0.815	0.77	0.687	0.752	0.711	0.029	0.938	0.93	0.979	0.966	0.718	0.977	0.565	0.452	0.329	0.856	0.989	0.334	0.912	0.971	0.939	0.95	0.984	0.953
6	-	-	-	-	-	0.009	0.013	0.023	0.889	0.856	0.87	0.644	0.807	0.945	0.947	0.967	0.978	0.649	0.957	0.862	0.827	0.783	0.846	0.947	0.779	0.91	0.935	0.906	0.972	0.984	0.943
7	-	-	-	-	-	-	0.008	0.023	0.887	0.852	0.864	0.643	0.807	0.941	0.944	0.968	0.978	0.648	0.956	0.859	0.822	0.78	0.844	0.947	0.776	0.906	0.937	0.907	0.976	0.988	0.943
8	-	-	-	-	-	-	-	0.027	0.882	0.86	0.862	0.642	0.81	0.947	0.953	0.974	0.974	0.649	0.956	0.858	0.818	0.784	0.842	0.947	0.782	0.915	0.936	0.912	0.977	0.986	0.948
9	-	-	-	-	-	-	-	-	0.892	0.857	0.871	0.649	0.817	0.941	0.942	0.962	0.967	0.656	0.956	0.859	0.829	0.785	0.841	0.946	0.781	0.901	0.932	0.913	0.966	0.98	0.942
10	-	-	-	-	-	-	-	-	-	0.746	0.617	0.789	0.767	0.972	0.979	1.007	0.99	0.768	0.98	0.787	0.781	0.754	0.828	0.983	0.754	0.948	0.972	0.929	0.974	0.978	0.977
11	-	-	-	-	-	-	-	-	-	-	0.703	0.813	0.68	0.923	0.918	0.956	0.974	0.788	0.976	0.802	0.799	0.731	0.84	0.971	0.724	0.907	0.949	0.942	0.973	1.03	0.94
12	-	-	-	-	-	-	-	-	-	-	-	0.775	0.749	0.943	0.966	0.943	1.008	0.783	0.967	0.825	0.817	0.744	0.842	0.989	0.749	0.965	0.947	0.93	1.006	0.987	0.971
13	-	-	-	-	-	-	-	-	-	-	-	-	0.707	0.949	0.954	0.959	0.955	0.137	1.006	0.823	0.767	0.695	0.888	1.008	0.704	0.958	0.989	0.926	0.959	0.959	0.931
14	-	-	-	-	-	-	-	-	-	-	-	-	-	0.942	0.932	0.984	0.963	0.71	0.986	0.561	0.436	0.318	0.865	0.994	0.323	0.908	0.968	0.944	0.956	0.981	0.956
15	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.119	0.946	0.935	0.937	0.767	0.981	0.924	0.934	0.965	0.784	0.925	0.901	0.917	0.951	0.924	0.983	0.976
16	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.97	0.933	0.939	0.784	0.961	0.902	0.924	0.972	0.8	0.921	0.903	0.928	0.955	0.926	0.982	0.982
17	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.875	0.963	0.961	0.984	0.975	0.959	0.958	0.946	0.96	0.987	0.903	0.964	0.863	0.907	0.853
18	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.93	0.915	1.007	0.968	0.965	0.985	0.947	0.967	0.963	0.888	0.926	0.823	0.85	0.872
19	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.004	0.835	0.758	0.701	0.908	1.001	0.711	0.942	0.976	0.949	0.968	0.957	0.933
20	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.98	0.985	0.997	0.957	0.209	0.987	0.923	0.967	0.919	0.923	0.981	0.932
21	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.532	0.552	0.871	0.978	0.542	0.9	0.913	0.949	1.002	0.997	0.96
22	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.287	0.876	0.979	0.302	0.911	0.965	0.965	0.978	0.997	0.961
23	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.824	1.0	0.038	0.893	0.949	0.945	0.955	0.976	0.934
24	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.963	0.824	0.919	0.917	0.88	0.94	1.01	0.912
25	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.992	0.926	0.976	0.947	0.94	1.003	0.938
26	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.883	0.931	0.939	0.957	0.964	0.943
27	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.959	0.771	0.97	0.953	0.947
28	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.938	0.858	0.889	0.875
29	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.968	0.939	0.964
30	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.834	0.843
31	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.947

Protein Sequences Index:

ID	Proten Label
1	Human
2	Chimpanzee
3	Dog
4	Green_Monkey
5	Beluga_Whale
6	Crab-eating_Macaque
7	Japanese_Macaque
8	Rhesus_Macaque
9	Pig-tailed_Macaque
10	Mouse
11	Rabbit
12	Rat
13	Common_Squirrel_Monkey
14	Bottle-nosed_Dolphin
15	Domestic_Duck
16	Muscovy_Duck
17	Japanese_Pufferfish
18	European_Seabass
19	White-tufted-ear_Marmoset
20	Chicken
21	Pig
22	Bovine
23	Sheep
24	Cat
25	Turkey
26	Goat
27	Gray_short-tailed_Opossum
28	Atlantic_Halibut
29	Tammar_Wallaby
30	Orange-spotted_Grouper
31	Mandarin_Fish
32	Spotted-green_Pufferfish