Example with CD4 Protein Sequences


Step 1: Protein Sequences

Download an example FASTA file: CD4 Protein Sequences


Step 2: Select the appropriate Amino Acid Indices from the Form



Step 3: Get the Results (Dendrogram and Distance Matrix), as shown below

Proteins 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32
1 0.018 0.864 0.12 0.801 0.11 0.109 0.11 0.12 0.854 0.837 0.838 0.626 0.801 0.92 0.927 0.978 0.977 0.632 0.955 0.849 0.83 0.784 0.85 0.948 0.778 0.901 0.937 0.907 0.989 0.977 0.931
2 - 0.862 0.124 0.8 0.125 0.122 0.123 0.133 0.847 0.826 0.829 0.615 0.799 0.922 0.929 0.975 0.983 0.624 0.96 0.847 0.828 0.781 0.849 0.947 0.774 0.906 0.933 0.909 0.98 0.98 0.921
3 - - 0.841 0.817 0.841 0.841 0.844 0.839 0.861 0.804 0.873 0.878 0.821 0.998 0.996 0.908 0.982 0.89 0.961 0.866 0.86 0.806 0.634 0.952 0.795 0.887 0.936 0.89 0.945 1.003 0.934
4 - - - 0.795 0.073 0.07 0.073 0.086 0.862 0.847 0.848 0.641 0.801 0.938 0.943 0.964 0.985 0.654 0.965 0.866 0.83 0.786 0.837 0.947 0.783 0.903 0.938 0.9 0.979 0.976 0.94
5 - - - - 0.805 0.806 0.809 0.815 0.77 0.687 0.752 0.711 0.029 0.938 0.93 0.979 0.966 0.718 0.977 0.565 0.452 0.329 0.856 0.989 0.334 0.912 0.971 0.939 0.95 0.984 0.953
6 - - - - - 0.009 0.013 0.023 0.889 0.856 0.87 0.644 0.807 0.945 0.947 0.967 0.978 0.649 0.957 0.862 0.827 0.783 0.846 0.947 0.779 0.91 0.935 0.906 0.972 0.984 0.943
7 - - - - - - 0.008 0.023 0.887 0.852 0.864 0.643 0.807 0.941 0.944 0.968 0.978 0.648 0.956 0.859 0.822 0.78 0.844 0.947 0.776 0.906 0.937 0.907 0.976 0.988 0.943
8 - - - - - - - 0.027 0.882 0.86 0.862 0.642 0.81 0.947 0.953 0.974 0.974 0.649 0.956 0.858 0.818 0.784 0.842 0.947 0.782 0.915 0.936 0.912 0.977 0.986 0.948
9 - - - - - - - - 0.892 0.857 0.871 0.649 0.817 0.941 0.942 0.962 0.967 0.656 0.956 0.859 0.829 0.785 0.841 0.946 0.781 0.901 0.932 0.913 0.966 0.98 0.942
10 - - - - - - - - - 0.746 0.617 0.789 0.767 0.972 0.979 1.007 0.99 0.768 0.98 0.787 0.781 0.754 0.828 0.983 0.754 0.948 0.972 0.929 0.974 0.978 0.977
11 - - - - - - - - - - 0.703 0.813 0.68 0.923 0.918 0.956 0.974 0.788 0.976 0.802 0.799 0.731 0.84 0.971 0.724 0.907 0.949 0.942 0.973 1.03 0.94
12 - - - - - - - - - - - 0.775 0.749 0.943 0.966 0.943 1.008 0.783 0.967 0.825 0.817 0.744 0.842 0.989 0.749 0.965 0.947 0.93 1.006 0.987 0.971
13 - - - - - - - - - - - - 0.707 0.949 0.954 0.959 0.955 0.137 1.006 0.823 0.767 0.695 0.888 1.008 0.704 0.958 0.989 0.926 0.959 0.959 0.931
14 - - - - - - - - - - - - - 0.942 0.932 0.984 0.963 0.71 0.986 0.561 0.436 0.318 0.865 0.994 0.323 0.908 0.968 0.944 0.956 0.981 0.956
15 - - - - - - - - - - - - - - 0.119 0.946 0.935 0.937 0.767 0.981 0.924 0.934 0.965 0.784 0.925 0.901 0.917 0.951 0.924 0.983 0.976
16 - - - - - - - - - - - - - - - 0.97 0.933 0.939 0.784 0.961 0.902 0.924 0.972 0.8 0.921 0.903 0.928 0.955 0.926 0.982 0.982
17 - - - - - - - - - - - - - - - - 0.875 0.963 0.961 0.984 0.975 0.959 0.958 0.946 0.96 0.987 0.903 0.964 0.863 0.907 0.853
18 - - - - - - - - - - - - - - - - - 0.93 0.915 1.007 0.968 0.965 0.985 0.947 0.967 0.963 0.888 0.926 0.823 0.85 0.872
19 - - - - - - - - - - - - - - - - - - 1.004 0.835 0.758 0.701 0.908 1.001 0.711 0.942 0.976 0.949 0.968 0.957 0.933
20 - - - - - - - - - - - - - - - - - - - 0.98 0.985 0.997 0.957 0.209 0.987 0.923 0.967 0.919 0.923 0.981 0.932
21 - - - - - - - - - - - - - - - - - - - - 0.532 0.552 0.871 0.978 0.542 0.9 0.913 0.949 1.002 0.997 0.96
22 - - - - - - - - - - - - - - - - - - - - - 0.287 0.876 0.979 0.302 0.911 0.965 0.965 0.978 0.997 0.961
23 - - - - - - - - - - - - - - - - - - - - - - 0.824 1.0 0.038 0.893 0.949 0.945 0.955 0.976 0.934
24 - - - - - - - - - - - - - - - - - - - - - - - 0.963 0.824 0.919 0.917 0.88 0.94 1.01 0.912
25 - - - - - - - - - - - - - - - - - - - - - - - - 0.992 0.926 0.976 0.947 0.94 1.003 0.938
26 - - - - - - - - - - - - - - - - - - - - - - - - - 0.883 0.931 0.939 0.957 0.964 0.943
27 - - - - - - - - - - - - - - - - - - - - - - - - - - 0.959 0.771 0.97 0.953 0.947
28 - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.938 0.858 0.889 0.875
29 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.968 0.939 0.964
30 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.834 0.843
31 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.947

Protein Sequences Index:

ID Proten Label
1 Human
2 Chimpanzee
3 Dog
4 Green_Monkey
5 Beluga_Whale
6 Crab-eating_Macaque
7 Japanese_Macaque
8 Rhesus_Macaque
9 Pig-tailed_Macaque
10 Mouse
11 Rabbit
12 Rat
13 Common_Squirrel_Monkey
14 Bottle-nosed_Dolphin
15 Domestic_Duck
16 Muscovy_Duck
17 Japanese_Pufferfish
18 European_Seabass
19 White-tufted-ear_Marmoset
20 Chicken
21 Pig
22 Bovine
23 Sheep
24 Cat
25 Turkey
26 Goat
27 Gray_short-tailed_Opossum
28 Atlantic_Halibut
29 Tammar_Wallaby
30 Orange-spotted_Grouper
31 Mandarin_Fish
32 Spotted-green_Pufferfish